Volume 3 ( 2004)


RESEARCH ARTICLES
pp. 1-13 Regulation of Gene Expression Using a Conditional RNA Antisense Strategy
Capucine Trollet, Magdelena Ibafiez-Ruiz, Carole Bloquel, Gabrielle Valin, Daniel Scherman, and Pascal Bigey
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pp. 14-16 Application of DNA Amplification for Genotyping Cattle from milk
K. Derecka, M. G. Hunter, M.D. Royal, C. Smith, and A.P.F Flint
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pp. 17-26 Subfamily Organization and Phylogenetic Origin of Genes Encoding Plastid Lipid-Associated Proteins of the Fibrillin Type
Yec'han Laizet, Dominique Pontier, Regis Mache, and Marcel Kuntz
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pp. 27-29 Ac Transposase Induces Methylation of a Ds Transposon in Trausgenic Tomato
Melquiades E.C, Reyes, Louisa Matthew, Joyce Wang, Gerard J. Bishop, Victor Klimyuk, Jonathan D.G. Jones, and Bernard J. Carroll
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pp. 30-37 High-Throughput and Cost-Effective Genome-wide Microsatellite Genotyping of Two Novel Cystic Fibrosis Mutant Mouse Strains
Nikoletta Charizopoulou, Frauke Stanke, martina Dorsch, Hans- Jurgen Hendric, and Burkhard Tummler
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pp. 38-44 Protein Fingerprinting: A Domain-Free Approch to protein Analysis
Jeffry L. Shultz
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Volume 2 Number 4 (December 2003)


RESEARCH ARTICLES
pp. 127-138 The TGA Stop Condon and the Phylogeny of the Selenocysteine Pathway
Trudy M. Wassenaar and Richard J. Meinersmann
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pp. 139-148 Correlation Analysis of mRNA and Protein Abundances in Hyman Tissues
Koji Kadota, Daisuke Tominaga, Ryoichi Asai, and Katsutoskhi Takahashi
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pp. 149-154 Sequence Comparison of the Whole Murine and Human CLCA Locus Reveals Conserved Synteny Between Both Species
Margit Ritzka, Christian Weinel, Frauke Stanke, and Burkhard Tümmler
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pp. 155-161 Identification of the T2R Repertoire of Taste Receptor Genes in the Rat Genome Sequence
Caroline Conte, Martin Ebeling, Anne Marcuz, and Pedro J. Andres-Barquin
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pp. 162-164 A Unique Study of DNA Analysis of Burnt Bones by DNA Fluorescent Technology: A Case Study
Prabal Chattopadhyay
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pp. 165-172 Angiotensin Converting Enzyme Gene Polymorphism: A Summary on Recent Reports from Various Countries
Viroj Wiwanitkit
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Volume 2 Number 3 (September 2003)

COMMUNICATION
pp.93-97 New Improvements for High-Resolution and High-Protein Load Using Basic Two-Dimensional Electrophoresis Gels
José-Luis Lopez and Ian Humphery-Smith
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RESEARCH ARTICLES
pp.98-105 Evaluating Physical Maps by Clone Location Comparisons
Jeffry Schultz, Khalid Meksem and David Lightfoot
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pp.106-118 Simple and Robust Array-based Methods for the Parallel Detection of Resistance Genes of Staphylococcus Aureus
Stefan Monecke, Ines Leube, and Ralf Ehricht
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pp.119-126 Validation of the LAMP Method for SNP Genotyping using Whole Blood
Masaomi Iwasaki Toshihiro Yonekawa, Kimihiko Otsuka, Wataru Suzuki, Kentaro Nagamine, Tetsu Hase, Ke-ita Tatsumi,Tsuneyoshi Horigome, Tsugunori Notomi,
and Hidetoshi Kanda

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Volume 2 Number 1/2 (March/June 2003)

EDITORIAL
p.1 Special issue on Campylobacter and Helicobacter Genomics
David Wayne Ussery and Burkhard Tümmler
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RESEARCH ARTICLES
pp.2-9 Retrieving the whole set of protein modules of Campylobacter jejuni and Helicobacter pylori
Quentin Sculo, Olivier Lespinet, and Bernard Labedan
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pp.10-11 HpyCyc: Helicobacter pylori Pathway / Genome Database
Peter D. Karp and Suzanne Paley
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pp.12-17 Helicobacter pylori gene expression in vivo: a genomic perspective
J. E. Graham
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pp.18-27 Investigation of the Campylobacter jejuni cold shock response by global gene expression analysis
Alain Stintzi and Lisa Whitworth
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pp.28-33 Patterns in the intergenic regions of Campylobacter jejuni
R. J. Meinersmann and T. M. Wassenaar
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pp.34-40 Genomic characteristics of the Campylobacter fetus sap island
Zheng-Chao Tu, David W.Ussery, David T. Pride, and Martin J. Blaser
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pp.41-47 Genetic variability and DNA repair: base excision activities in
Helicobacter pylori

Eyleen J. O'Rourke, Aurelle Mathieu, Luis Lelpi, and J. Pablo Radicella
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pp.48-52 Genetic exchange among Campylobacter species
R. J. Meinersmann, K.E. Dingle, and M.C.J. Maiden
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pp.53-61 Classification and typing of Campylobacter: application of genotypical methods in veterinary medicine
Lothar H. Wieler and Claudia Laturnus
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pp.62-72 Detection of seven virulence and toxin genes of Campylobacter jejuni and Campylobacter coli isolates from different sources and Cytolethal Distending Toxin production suggest potential diversity of pathogenic properties among isolates
Dang Duong Bang, Flemming Scheutz, Kim Oren Gradel, Eva Moller Nielsen, Karl Pedersen, Jorgen Engberg, Peter Gerner-Smidt, Kurt Handberg, and Mogens Madsen
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pp.73-82 Cytolethal distending toxins (CDT) of Campylobacter jejuni. Genetics, structure, mode of action, epidemiology and the role of CDT in Campylobacter pathogenesis
Dang Duong Bang and Mogens Madsen
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pp.83-87 Evidence of Helicobacter pylori's invasive potential
Karen Angeliki Krogfelt
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pp.88-92 Helicobacter vaccine development based on global approaches
Dirk Burmann, Peter R. Jungblut, and Thomas F. Meyer
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Volume 1 Number 4 (December 2002)

RESEARCH ARTICLES
Infrequent and Unusual p53 Mutations in Breast Cancers in South Africa
Howard Donninger, David M. Dent, and M. Iqbal Parker
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GeneChip Expression Analysis of the Response of Pseudomonas aeruginosa to Paraquat Induced Superoxide Stress

Prabhakar Salunkhe, Franz von Götz, Lutz Wiehlmann, Jörg Lauber, Jan Buer,
and Burkhard Tümmler

[Abstract] [Full Text - PDF] [Full Text - RealPage] [Purchase Article]

Comparative Genomics of Pseudomonas aeruginosa PAO1 and Pseudomonas putida KT2440: Orthologs, Codon Usage, REP Elements and Oligonucleotide Motif Signatures
Christian Weinel, David W. Ussery, Hakan Ohlsson, Thomas Sicheritz-Ponten, Claudia Kiewitz, and Burkhard Tümmler
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Structure and Expression of the Murine Annexin A9 (Anx A9) gene
Arseni Markoff, Vladimir Kuryshev, Eugene Vorobyov, Nadia Bogdanova, Ursula Rescher, Verena Goebeler, Alexander Kondrashov, and Velker Gerke
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Volume 1 Number 3 (September 2002)

RESEARCH ARTICLES
Similar Profile of Single Nucleotide Substitution Types in Bacteria and Human Genetic Disease,
Claudia Kiewitz, Burkhasrd Tümmler
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Bali1A, a Possible LINE Partner for the SINE S1 in Brassica napus, Laurence lavie, José Prieto,
Chrostophe Tatout, Jean-Marc Deragon
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Signature Tagged Mutagenesis of Pseudomonas aeruginosa,
Lutz Wiehlmann, Prabhakar Salunkhe, Karen Larbig, Margit Ritzka, Burkhard Tümmler
[Abstract] [Full Text - PDF] [Full Text - RealPage] [Purchase Article]

Modified Differential Display Method with Double-Stranded cDNA, A More Efficient Approach,
Hao Xu, Laila J. Salmonsen, Anders Hansen, Joachim Karlsen, M. Raafat El-Gewely
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Analysis of 5S rDNA Loci among Arabidopsis Ecotypes and Subspecies,
S. Tutois, C. Cloix, O. Mathieu, C. Cuvillier, S. Tourmente
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Fast Neutron Mutagenesis of Soybean (Glycine soja L.) Produces a Supernodulating Mutant Containing a Large Deletion in the Linkage Group H.,
Artem E. Men, Titeki S. Laniya, Iain R. Searle, Inaki Iturbe-Ormaetxe, Irma Gresshoff, Qunyi Jiang, Bernard J. Carroll and Peter M. Gresshoff
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Volume 1 Number 2 (June 2002)

COMMUNICATIONS
pp.57-60 Accumulation of MSH2 at Promyelocytic Leukemia Protein Bodies Suggests a Role of Nuclear Bodies in Regulating Genome Stabilizing Factors
Daniele Zink and Lisa Wiesmüller
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RESEARCH ARTICLES
pp.61-70 Genome Codon Index of Pseudomonas aeruginosa: A Codon Index that Utilizes Whole Genome Sequence Data
Claudia Kiewitz, Christian Weinel, and Burkhard Tümmler
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pp.71-76 The Plant Sigma Factors: Structure and Phylogenetic Origin
Regis Mache, A. Cottet, A. Imberty, AM Hakimi, and S. Lerbs-Mache
[Abstract] [Full Text - PDF] [Full Text - RealPage] [Purchase Article]

pp.77-82 Functional Analysis of Arabidopsis Transcription Factor GT- 1 in the Expression of Light-Regulated Genes
José Le Gourrierec, Virginie Delaporte, Mira Ayadi, You-Fang Li, and Dao-Xiu Zhou
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pp.83-104 The Origin and Evolution of Eukaryotic Protein Kinases
Asako Koike, Kenta Nakai and Toshihisa Takagi
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pp.105-109 A Biologically Active Family of Human Endogenous Retroviruses Evolved from an Ancient Inactive Lineage
I. King Jordan and John F. McDonald
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Volume 1 Number 1 (March 2002)

EDITORIAL
p.1 Welcome To The Genome Letters
Burkhard Tümmler
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RESEARCH ARTICLES
pp.2-15 Identification of horizontally acquired genetic elements in Helicobacter pylori and other prokaryotes using oligonucleotide difference analysis
David T. Pride and Martin J. Blasé, USA
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pp.16-25 Visualization and significance of DNA structural motifs in the Campylobacter jejuni genome
Lise Petersen, Stephen L.W. On, and David W. Ussery, DENMARK
[Abstract] [Full Text - PDF] [Full Text - RealPage] [Purchase Article]

pp.26-34 Gene expression profiling of metastatic and non-metastatic colorectal cancer
cell lines

Matthias Futschik, Aaron Jeffs, Sharon Pattison, Nikola Kasabov, Michael Sullivan,
Arend Merrie, and Anthony Reeve, NEW ZEALAND

[Abstract] [Full Text - PDF] [Full Text - RealPage] [Purchase Article]

pp.35-47 Copia-likeretrotransposons in rice genome: few and assorted
Carlos M. Vicient and Alan H. Schulman, FINLAND
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pp.48-55 Identification of transposon-tagged maize genes displaying homology to arrayed cDNA clones using Mutator insertion Display
David Edwards, David Stevenson, Alec Forsyth, Matthew Hegarty, Jacqueline Batley, Mike Holdsworth, and Keith J. Edwards, UK
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